## Directory structure

- appdata/: contains all data used to create and used by the TEDEdb-app. scripts/appdata.R details the creation of the SummarizedExperiment object used as the backend for the database application.
- bioprojects/: contains subdirectories named by their NCBI BioProject ID from GEO. Each subdirectory 
contains all raw and processed data, analysis scripts, and analysis output for that particular 
bioproject.
- resources/ : contains all of the REdiscoverTE resources (Salmon index and annotation) used in the construction of TEDEdb 
- scripts/: contains all processing scripts used to download data from SRA and process for use in the meta-app. The scripts generally describe the processing steps for a single bioproject.